Review Article
Open Access
Mammalian P5CR and P5CDH: Protein Structure and
Disease Association
Chien-An A. Hu1* and Yongqing Hou2
1Department of Biochemistry and Molecular Biology, University of New Mexico Health Sciences Center, Albuquerque,
New Mexico 87131-0001, USA
2School of Animal Science and Nutritional Engineering, Wuhan Polytechnic University, Wuhan, Hubei, 430023, P. R. China
2School of Animal Science and Nutritional Engineering, Wuhan Polytechnic University, Wuhan, Hubei, 430023, P. R. China
*Corresponding author: Chien-An A. Hu, MSC08 4670, Department of Biochemistry and Molecular Biology, UNM HSC, Albuquerque, NM87131, USA,
Tel: +505-272-8816; E-mail:
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Received: September 01, 2014; Accepted: October 20, 2014; Published: October 30, 2014
Citation: Hu CAA, Hou Y (2014) Mammalian P5CR and P5CDH: Protein Structure and Disease Association SOJ Biochem 1(1), 4. DOI: http://dx.doi.org/10.15226/2376-4589/1/1/00105
The interconversions of L-proline (Pro) and L-glutamate (Glu)
in mammalian cells involve an obligatory intermediate, Δ1-pyrroline-
5-carboxylate (P5C/PYC), and four uni-directional enzymes, proline
oxidase/dehydrogenase (POX/PRODH), P5C dehydrogenase (P5CDH),
P5C synthase (P5CS/PYCS), and P5C reductase (P5CR/PYCR). The
catabolism of Pro by two dehydrogenation reactions catalyzed by POX
and P5CDH is an important source of oxidizing signaling, whereas
the anabolism of Pro through two reduction reactions catalyzed by
P5CS and P5CR maintains redox homeostasis to promote cell growth.
In addition, Pro is one of the “conditionally essential” amino acids in
the neonatal intestine in both humans and animals. The homeostatic
balance of Pro, Glu, and Arginine is critical for the growth, redox
balance, immunomodulation, and development of mammals. Recent
discoveries strongly suggest that Pro metabolic enzymes are tightly
regulated by spatial-temporal gene expression, tissue and cellspecificity,
substrate and/or inhibitor abundance, and subcellular
compartmentalization. In terms of disease association, mutations in
human P5CR1 gene have been identified in patients with autosomal
recessive Cutis laxa type IIB and type IIIB/De Barsy syndrome,
whereas mutations in P5CDH gene cause type II hyperprolinemia.
Importantly, x-ray crystallographic studies have revealed the protein
structures of human P5CR1 and mammalian P5CDH. These new
discoveries in structure function relationship may provide crucial
guidelines in the treatment of the corresponding disorders
Keywords: Cutis laxa Type IIB and Type IIIB; De Barsy syndrome; DJ-1; ORAOV1; P5CR/PYCR; P5CDH; Subcellular localization
Keywords: Cutis laxa Type IIB and Type IIIB; De Barsy syndrome; DJ-1; ORAOV1; P5CR/PYCR; P5CDH; Subcellular localization
P5C/PYC: Δ1-pyrroline-5-carboxylate; P5CDH: P5C
Dehydrogenase; P5CR: P5C Reductase; P5CS: P5C Synthase; OAT:
Ornithine Aminotransferase; GSA: Glutamic-γ-Semialdehyde
In mammals, L-proline (Pro) and L-glutamate (Glu) are
interconverted by four highly regulated,
uni-directional enzymes, namely, Pro oxidase/dehydrogenase (POX/PRODH),
Δ1-pyrroline-5-carboxylate (P5C/PYC), P5C Dehydrogenase
(P5CDH), P5C Synthase (P5CS/PYCS), and P5C Reductase (P5CR/
PYCR), with P5C as the obligatory intermediate[1-4] (Table 1). P5C is in tautomeric equilibrium with Glutamic-γ-Semialdehyde
(GSA), which is reduced to Pro by the cytosolic and mitochondrial
NAD(P)H-dependent P5CR isozymes. In addition, P5C/GSA is a
substrate for two other enzymes, mitochondrial P5CDH, which
converts P5C/GSA to Glu [5], and mitochondrial Ornithine (Orn)
Aminotransferase (OAT), which catalyzes the interconversion of
P5C and Orn [6]. Orn enters the urea cycle mainly for ammonia
detoxification and Arginine (Arg) biosynthesis (Figure 1). It
has been shown that Pro and Arg are two of the “conditionally
essential” amino acids in the neonatal intestine of mammals.
The interconversions of Pro, Orn, Glu, and Arg are critical for
the growth and immunomodulation of mammals [1,4,7]. At the
cellular level, the catabolism/degradation of Pro by POX and
then P5CDH is an important source of redox signaling, whereas
the anabolism/biosynthesis of Pro through P5CS and then P5CR
maintains redox homeostasis to promote cell growth. In this
review, we summarize the recent discoveries on human P5CR
isozymes and P5CDH and their associated diseases/disorders.
Three isozymes of human P5CR/PYCR (EC1.5.1.2), have
been identified, cloned, and characterized [1,2,8]. Human
P5CR1, P5CR2, and P5CRL are encoded by three different genes,
localized at three different chromosomal locations (Table 1).
These three isozymes catalyze ATP and NAD(P)H-dependent
reduction of P5C to Pro, which is important for the transfer of
oxidizing potential across the cell [9,10]. The human P5CR1/
PYCR1 structural gene [also known as Proliferation-Inducing
protein 45 (PIG45)] is localized on chromosome 17q25.3, which
encodes two protein isoforms, a 319-amino acid residue (aa)
and a 316-aa polypeptide, respectively. The human P5CR2/
PYCR2 structural gene is localized on chromosome 1q42.12,
which encodes two protein isoforms, a 320-aa and a 246-aa
polypeptide, respectively. Recently, De Ingeniis and colleagues
[8] confirmed that there is a new isozyme of P5CR, P5CRL, in
melanoma cells. The human P5CRL/PYCR3 structural gene is
localized on chromosome 8q24.3, which encodes two isoforms, a
286-aa and a 266-aa polypeptide, respectively.
Table 1: Human P5CR Isozymes and P5CDH: from genes to protein isozymes to associated disorders.
Enzyme |
Gene Name |
Gene ID |
Map Location |
OMIM# |
Isozyme |
# Amino Acids |
P5CR1 |
PYCR1/P5CR1 |
5831 |
17q25.3 |
179035 |
P5CR1.1 |
319 |
612940 |
P5CR1.2 |
316 |
||||
614438 |
||||||
P5CR2 |
PYCR2/P5CR2 |
29920 |
1q42.12 |
N/A |
P5CR2.1 |
320 |
P5CR2.2 |
246 |
|||||
P5CRL/P5CR3 |
PYCRL/P5CR3 |
65263 |
8q24.3 |
N/A |
P5CRL.1 |
286 |
P5CRL.2 |
266 |
|||||
P5CDH |
ALDH4A1/P5CDH |
8659 |
1p36 |
606811 |
P5CDH |
563 |
Figure 1: Comparison of the catabolism of arabinose (left) and mannitol (through the ED pathway, right) in Bradyrhizobium diazoefficiens with emphasis
in the reactions where reducing power is generated. KDA: 2-keto-3-deoxyarabonate; Glc6P: glucose-6-phosphate; 6PG: 6- phosphogluconate;
KDPG: 2-keto-3-deoxyphosphogluconate; G3P: glyceraldehyde-3-phosphate; 3PG: 3-phosphoglycerate.
In addition, it has been demonstrated that P5CR1 and P5CR2 are localized in the
mitochondria and are primarily involved in conversion of Glu to
Pro, whereas P5CRL is localized in the cytosol and is exclusively
linked to the conversion of Orn to Pro, and is not feedback
inhibited by proline. Previously, Merrill and colleagues [11]
showed that human P5CR in erythrocytes not only catalyzes the
obligatory step in Pro biosynthesis, but also plays a physiological
role in the generation of NADP+. The normal abundance of P5CR
in the cell is maintained relatively low due to its high turnover
[9]. A recent study by Krishnan and colleagues [12] showed over
expression of P5CR1 resulted in 2-fold higher proline content,
significantly lowered free radical levels, and increased cell
survival. Another studies showed that increased P5CR1 activity
was measurable in pulmonary and colorectal tumors [13,14]. In
contrast, mammalian P5CR2 and P5CRL are relatively new and
not well studied.
With regard to their interactomes, interestingly, PYCR1 has been identified as an interacting protein of two important regulatory proteins, DJ-1 [15] and Oral Cancer Over expressed 1 (ORAOV-1) [16]. DJ-1, encoded by the DJ-1/PARK7 gene, plays various functions involved in transcriptional regulation, antioxidative activity, and regulation of mitochondrial complex I. It has been shown that DJ-1 and PYCR1 interacts and colocalizes in mitochondria. DJ-1 increases the enzymatic activity of PYCR1 in vitro [15]. ORAOV1, encoded by ORAOV1 gene, is frequently amplified in esophageal squamous cell cancer, and has been shown to regulate the cell cycle, apoptosis and angiogenesis. Cancer cells overexpressing ORAOV1 exhibited significantly increased tumorigenicity and larger tumors with poor differentiation. It has been shown that ORAOV1 also increases the enzymatic activity of PYCR1 and the production of Pro when it binds with P5CR1 [16]. However, whether P5CR1, DJ-1, and ORAOV1 interact with each other and function in the same complex in certain cell types is not known.
With regard to their interactomes, interestingly, PYCR1 has been identified as an interacting protein of two important regulatory proteins, DJ-1 [15] and Oral Cancer Over expressed 1 (ORAOV-1) [16]. DJ-1, encoded by the DJ-1/PARK7 gene, plays various functions involved in transcriptional regulation, antioxidative activity, and regulation of mitochondrial complex I. It has been shown that DJ-1 and PYCR1 interacts and colocalizes in mitochondria. DJ-1 increases the enzymatic activity of PYCR1 in vitro [15]. ORAOV1, encoded by ORAOV1 gene, is frequently amplified in esophageal squamous cell cancer, and has been shown to regulate the cell cycle, apoptosis and angiogenesis. Cancer cells overexpressing ORAOV1 exhibited significantly increased tumorigenicity and larger tumors with poor differentiation. It has been shown that ORAOV1 also increases the enzymatic activity of PYCR1 and the production of Pro when it binds with P5CR1 [16]. However, whether P5CR1, DJ-1, and ORAOV1 interact with each other and function in the same complex in certain cell types is not known.
The crystal structure of human P5CR1 have been reported
recently [13,14]. The 2.8 Angstroms (Å) resolution structure of
the P5CR1 apo enzyme and its 3.1 Å resolution ternary complex
with NAD(P)H and substrate-analog demonstrated that human
P5CR1 possesses a decameric architecture with five homodimer
subunits. It has been hypothesized that human P5CR1 possesses
ten catalytic sites arranged around a peripheral circular groove.
In terms of disease association, homozygous or compound
heterozygous mutations in human P5CR1 have been identified
in autosomal recessive Cutis laxa, Type IIB (ARCL2B or Cutis
laxa with progeroid features; OMIM #612940; Table 1) [17-19].
The clinical phenotype of ARCL2B includes cutis laxa, abnormal
growth and development, and associated skeletal abnormalities
[18]. In addition, P5CR1 mutations have been linked to autosomal
recessive cutis laxa type III (ARCL3, OMIM #614438), also known as De Barsy syndrome. ARCL3 is a rare autosomal recessive
disorder, characterized by an aged appearance with distinctive
facial features, sparse hair, ophthalmologic abnormalities,
intrauterine growth retardation, and cutis laxa.
Mammalian P5CDH (EC 1.5.1.12) is a mitochondrial matrix
NAD+-dependent dehydrogenase which converts P5C/GSA to
Glu, and thus is a high Km/low affinity Aldehyde Dehydrogenase
(ALDH) with GSA as a primary substrate. Mammalian P5CDH also
exhibits activity with other aldehydes, and is dubbed as ALDH4A1
(ALDH, family 4, subfamily A, member 1) [1,2] (Table 1). Human
P5CDH/ ALDH4A1 structural gene is localized on chromosome
1p36 and encodes a 563-aa polypeptide [1,5]. Importantly, it has
been demonstrated in plants that Lack of P5CDH activity led to
higher ROS production in the presence of Pro excess. Therefore,
oxidation of P5C to Glu by P5CDH is critical to prevent P5C-Pro
intensive cycling and avoid ROS production from electron run-off
[20-22]. In addition, it has been shown that Drosophila deficient
in P5CDH showed hyperprolinemia, swollen mitochondria,
and early embryonic lethality [23]. Taken together, these
observations suggest that P5CDH plays a protective role against
ROS generation, mitochondria and cell damage, and apoptosis.
To understand the functions of P5CDH at the molecular level, how substrates and inhibitors interact with the enzyme, and how the substituted residues encoded by the mutant alleles of P5CDH can affect the enzymatic activity, the crystal structures of human and mouse P5CDH were determined recently [24,25] . Both wildtype P5CDH and mutant P5CDH proteins carrying S352A (2.4 Å) and S352L (2.85 Å) substitutions were resolved. In addition, 2.5-Å resolution Structures of the mouse P5CDH complexed with sulfate ion (1.3 Å resolution), glutamate (1.5 Å), and NAD+ (1.5 Å) were determined in order to obtain high resolution views of the active site. Together, the structures showed that single amino acid substitutions cause structural alterations and enzyme inactivation. Interestingly, the structure activity relationship demonstrated that the semialdehyde carbon chain length and the position of the aldehyde group in relation to the cysteine nucleophile and oxyanion hole of mouse P5CDH are critical. Efficient 4- and 5-carbon substrates share the common feature of being long enough to span the distance between the anchor loop at the bottom of the active site and the oxyanion hole at the top of the active site. The inactive 2- and 3-carbon semialdehydes bind the anchor loop but are too short to reach the oxyanion hole [25]. The Ki values are 0.27 mM for glyoxylate, 58 mM for succinate, 30 mM for glutarate, and 12 mM for L-glutamate. Interestingly, malonate is not an inhibitor [25]. With regard to its disease association, deficiency of P5CDH causes type II Hyperprolinemia (HPII), an autosomal recessive disorder characterized by accumulation of P5C and Pro [6,26,27]. Although HPII has been considered as a benign disorder, further research indicated that HPII may cause clinical manifestations, such as childhood febrile seizures.
To understand the functions of P5CDH at the molecular level, how substrates and inhibitors interact with the enzyme, and how the substituted residues encoded by the mutant alleles of P5CDH can affect the enzymatic activity, the crystal structures of human and mouse P5CDH were determined recently [24,25] . Both wildtype P5CDH and mutant P5CDH proteins carrying S352A (2.4 Å) and S352L (2.85 Å) substitutions were resolved. In addition, 2.5-Å resolution Structures of the mouse P5CDH complexed with sulfate ion (1.3 Å resolution), glutamate (1.5 Å), and NAD+ (1.5 Å) were determined in order to obtain high resolution views of the active site. Together, the structures showed that single amino acid substitutions cause structural alterations and enzyme inactivation. Interestingly, the structure activity relationship demonstrated that the semialdehyde carbon chain length and the position of the aldehyde group in relation to the cysteine nucleophile and oxyanion hole of mouse P5CDH are critical. Efficient 4- and 5-carbon substrates share the common feature of being long enough to span the distance between the anchor loop at the bottom of the active site and the oxyanion hole at the top of the active site. The inactive 2- and 3-carbon semialdehydes bind the anchor loop but are too short to reach the oxyanion hole [25]. The Ki values are 0.27 mM for glyoxylate, 58 mM for succinate, 30 mM for glutarate, and 12 mM for L-glutamate. Interestingly, malonate is not an inhibitor [25]. With regard to its disease association, deficiency of P5CDH causes type II Hyperprolinemia (HPII), an autosomal recessive disorder characterized by accumulation of P5C and Pro [6,26,27]. Although HPII has been considered as a benign disorder, further research indicated that HPII may cause clinical manifestations, such as childhood febrile seizures.
This work was supported, in part, by the pilot projects (#030-
2 and #0224 to CAAH) of UNM CTSC grant (8UL1TR000041).
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