Research Article
Open Access
Small Scale Purification of Inactivated Enterovirus
A71 Produced from Vero Cell Cultures and Purity
Determination
Duanthanorm Promkhatkaew1*,Nadthanan Pinyosukhee2,Rattanawadee Wichajarn2,
Manoch Posung2 and Suthida Tuntigumthon2
1Medical Sciences Technical Office, Department of Medical Sciences, Ministry of Public Health.
2Medical Life Science Institute, Department of Medical Sciences, Ministry of Public Health.
*Corresponding author: Duanthanorm Promkhatkaew, PhD, Chief, Medical Sciences Technical Office, Department of Medical Sciences, Ministry of Public Health, 88/7 Tiwanon Road, Muang, Nonthaburi, 11000 Thailand, Tel: +662 951 0000 ext. 99363, Fax: +662 951 1297; Email:
@
Received: July 21, 2019; Accepted: August 03, 2019; Published: August 12, 2019
Citation: Duanthanorm P, Nadthanan P, Rattanawadee W, Manoch P, Suthida T (2019) Small Scale Purification of Inactivated Enterovirus A71 Produced from Vero Cell Cultures and Purity Determination. Int J Vaccine Res 4(2): 1-9. DOI:
10.15226/2473-2176/4/2/00133
Development of enterovirus A71 (EV-A71) vaccine to prevent severe symptoms or even fatalities caused by EV-A71 infection is very much
interested worldwide. In this study, high titers of EV-A71 could be produced with Vero cell cultures either by roller bottle or small scale bioreactor
system. To inactivate the virus, we found that appropriate condition to inactivate the virus completely was 0.01% formaldehyde, 37oC for 24 hr,
while at 4oC either with 0.01% or 0.02% formaldehyde, the virus still existed after 240 hr incubation. We developed purification process of the
inactivated EV-A71 by size exclusion with the techniques of 100 kDa tangential flow filtration (TFF), subsequent 10% - 50% sucrose density gradient
ultracentrifugation, and washing by ultracentrifugation with 30% sucrose, and characterized the purity by parameters as follows. Comparable
to initial amounts before taken to purification by these methods, residual total proteins were decreased as 44.6%, 0.9% and 0.3%, respectively,
bovine serum albumin was 58.8%, 0.04% and 0.01%, respectively, Vero cell proteins was 53.0%, 0.58% and 0.03%, respectively, while Vero cell
DNA which was monitored after 10% - 50% sucrose density gradient ultracentrifugation, and washing by ultracentrifugation were 0.06% and
0.008%, respectively, however, the recovery of VP1 antigen was only 2.1%. To evaluate the purity according to standard requirements, a predicted
human dose of 1.0 μg/0.5 ml total proteins of purified inactivated EV-A71 was set. By this, some revealed 180 – 900 doses per purification run. All
parameters met the requirements as the maximum amount of total proteins was only 1.0 μg, BSA was 5.7 ng, and Vero cell DNA was 1.03 ng per
dose, while Vero cell proteins were 0.126 μg/ml. Moreover, the amount of VP1 antigen ranged 233 – 599 ng per dose. This purification process
demonstrated high purity of inactivated EV-A71 that should be investigated further as an EV-A71 vaccine candidate.
Keywords: Enterovirus A71 vaccine; EV-A71 vaccine; inactivated EV-A71 vaccine; vaccine purification; EV-A71 vaccine purification;
Hand, foot and mouth disease (HFMD) is a common virus
illness in infants and children caused by enteroviruses, and
enterovirus A71 (EV-A71) is known to be the cause of the disease
with severe morbidity and mortality. EV-A71 infections, although
present in most countries, the largest outbreaks of disease have
been reported in many countries in the Asia-Pacific region, and
since 1997, EV-A71 infections have been a major public health
burden and epidemiologic concern in the Asia-Pacific Region [1,
2, 3]. Severe manifestations caused by EV-A71 are neurological
symptoms which range from aseptic meningitis to acute flaccid
paralysis and brainstem encephalitis, and association with
severe pulmonary edema and shock in many cases. Due to the
lack of antiviral drug against EV-A71 to treat the cases of severe
manifestations, therefore developing the vaccine to prevent
severe symptoms or even fatalities caused by this virus is very
much interested worldwide. There have been several types of
the vaccine being developed. Each type has its own advantages
and disadvantages, however, the inactivated EV-A71 vaccine is
considered the safest viral vaccine, as there will be no reversion
to an infectious virus, therefore, we were interested to develop
the inactivated EV-A71 virus as the vaccine candidate. Since
Vero cells are susceptible for EV-A71 growth, and adherent Vero
cells can be easily scalable for further larger virus production
in bioreactor systems, in this study we thus used Vero cell
cultures to propagate the virus in roller bottles and also smaller
scale bioreactor system to provide product viruses for studying
purification process.
From the cell cultures, plenty of bimolecular rather than the
virus product were generally generated from host cells, and since
culture medium was added as well as serum for optimal growth
of mammalian cells as it is a source of nutrients, hormones and
growth factors, and also facilitate the attachment and spreading
of cells, and provide protection against mechanical damage and
shear forces, various proteins, lipids, nucleic acids, and other
bimolecular as well as bovine proteins from serum were removed
intensively from the virus product [4, 5]. In addition, the residual
DNA from Vero cells has been proofed positive to carcinogenicity
test after over 170 passages, thus their genomic DNA carried
in vaccines could be oncogenic and hence poses a potential
risk for human carcinogenesis [6, 7 and 8], therefore, strictly
removal of Vero cell DNA was needed. Since tangential-flow
filtration is an efficient method for concentration and separation
of bimolecular by retaining product molecules and removing
unwanted molecules through membrane by size exclusion, and
density gradient centrifugation can be used for purification of
bimolecular on the basis of size and density through a gradient of
viscous liquid, such as sucrose or glycerol, and when centrifuged,
with gravity, virus particles will migrate until reaching their
densities. We thus developed a purification process based on
such techniques.
Recently, we have described elsewhere that our inactivated EVA71
vaccine candidate produced from Vero cells and purified the
inactivated virus similarly as described in the present report, gave
high neutralizing antibodies in mice [9]. In the present study, we
achieved small scale process for producing the inactivated EV-A71
vaccine candidate including the condition for virus inactivation,
down-stream purification based on tangential-flow filtration
and sucrose gradient ultracentrifugation, and characterization
of product purity in various parameters. Therefore, these results
provided valuable relevant information for cell-based EV-A71
vaccine development for further investigations.
Virus
The sub-genotype C4 EV-A71, strain THA-08-29961 isolated
from a fatal case with severe hand-foot and mouth disease
in Thailand in 2008 (Kindly provided by Guntapong R, et al,
National Institute of Health, Department of Medical Sciences,
Thailand) was used to prepare the virus stock by propagation
in 90% Rhabdomyosarcoma (RD, ATCC: CCL-136) confluent cell
monolayer in modified Eagle’s medium (MEM) with 2% fetal
bovine serum (FBS) as described elsewhere to prepare as the
target EV-A71 [10].
Determination of EV-A71 titer
Viral titration was performed by the plaque assay. Confluent
monolayers of RD cells were prepared in 24-well plates
(2x105cells/well). The cells were infected with serial dilutions of
viral suspensions, overlaid with 1.5% agarose gel in the culture
medium DMEM + 2% fetal bovine serum (FBS), and incubated at
37°C for 3 days. To visualize the plaques, stain the gel with crystal
violet, and the viral titer was estimated in pfu/ml by the plaque
assay [11].
Production of EV-A71
To propagate the EV-A71 in a roller bottle, 2.0 x 107 Vero
cells (CCL-81, ATCC, VA, USA) were seeded in a 850 cm2 roller
bottle containing the culture medium EMEM + 10% FBS until cell
monolayer was performed. EV-A71 was produced by inoculating
the EV-A71 seed onto Vero cell monolayer at a multiplicity of
infection (MOI) of 10−5 with EMEM + 2% FBS, and bottles were
rotated at 0.33 rpm at 37oC on a roller bottle rack as previously
described [9]. EV-A71 was collected from the culture supernatant
of each roller bottle at day 4 post infection and determined by
the plaque assay [11]. The cells were lysed by freezing-thawing
at -80oC and 37oC for 3 times, and the lysate was collected by
centrifugation at 2,000 RPM at 4oC for 20 min. Cell debris were
removed by filtration through a 0.65 μm membrane (Sartorius
Stedim Biotech, USA).
To propagate the virus in a small scale bioreactor, 1.2 x 108
Vero cells were grown on Micro carrier beads (Cytodex-1, Merck)
in a spinner flask (Merck), and stirred at 30 rpm in 37°C at 5%
CO2. The mixture of cells and micro carriers was transferred to 2.0
L EMEM (Thermo Fisher Scientific) containing 10% fetal bovine
serum (Sigma Aldrich) in a 5-L bioreactor (Biostat A, Sartorius)
operated under the conditions of 40 rpm, 37°C, pH 7.4, and partial
pressure of oxygen (pO2) of 50% air saturation. After day 3, when
the cell density exceeded around 1.0 × 106 cells/ml, the culture
medium was removed, and 0.0001 MOI EV-A71 was inoculated
to the cell monolayers formed on the outer surface of micro
carriers for 5 hr, then the bioreactor was filled with the medium
up to 2.0 L and continuously operated at 40 rpm, 37°C, pH 7.4
and 50% air saturation and incubated further for another 3 days
and then harvested. The virus growth was observed by 95% of
cells exhibited the cytopathic effect (CPE) under a converted
microscope, and determined by the plaque assay [11], then the
virus was harvested similarly as those cultured by roller bottles.
Study of condition for inactivation of EV-A71
Formaldehyde solution (37%) (Merck) was added into 30.0
ml culture medium EMEM containing 1.8 x 107pfu/ml EV-A71 as
0, 0.01% or 0.02% final concentration, and each condition was
incubated at 37oC for 0, 24, 48 and 72 hr, or at 4oC for 0, 48, 96,
168, and 240 hr. After each time interval, the suspensions were
determined residual EV-A71 by the plaque assay [11].
Purification of inactivated EV-A71
Before EV-A71 purification, the culture medium supernatant
was harvested by centrifugation and cell debris removal by
filtration through 0.65 μ as described earlier. The virus was then
inactivated with the optimal condition studied earlier as 0.01%
formaldehyde at 37oC for 24 hr.
The inactivated EV-A71 was then concentrated, and some
unwanted proteins, lipids, nucleic acids and salts were removed
by using a 100 kDa cut-off tangential flow filtration (TFF)
membrane cassette (Sartorius Stedim Biotech, USA) by filtering
the inactivated EV-A71 through the TFF apparatus against PBS
pH 7.4 of at least 5 times higher volume of the inactivated virus
suspension, and the retentive was collected.
The inactivated EV-A71 was then purified further with 2
volumes of continuous 10% - 50% sucrose density gradient
ultracentrifugation by mixing 10% with 50% sucrose solution in
PBS pH 7.4 into an ultracentrifuge tube using a gradient former
(Model 385, Bio-Rad), the inactivated EV-A71 was then layered
over the gradient and centrifuged at 36,000 rpm, 4oc for 3 hr
using a zonal rotor in an ultracentrifuge (CP-NX Series, Hitachi,
Japan). After centrifugation, 1.0 ml each fraction was collected
from the top until the pellet at the bottom of the tube. Further
optional was washing step by centrifugation the pellet with 30%
sucrose at 36,000 rpm, 4oC for 90 min, and the pellet collected
was dissolved with PBS pH 7.4. The fractions and pellet collected
were checked for total protein by the Bradford assay as described
by the manufacturer (Bio-Rad), and the EV-A71 VP1 protein by
quantitative ELISA as described further.
Determination of EV-A71 VP1 by quantitative ELISA
Anti-EV71 VP1 mouse polyclonal antibody (GeneTex, USA)
was diluted to be 0.5 μg/ml and coated onto microtiter plates
at 4oC overnight. One hundred μl EV-A71 samples diluted as
1:10 to 1:10,000 as appropriated were added onto the coated
plates and incubated for 1 hr, and 1 μg/ml anti-EV71 VP1 mouse
monoclonal antibody (Abnova, USA) was then added into the
wells and incubated for 1 hr. To determine the reaction, 1:10,000
anti-mouse IgG antibody-horse radish peroxidase conjugate
(KPL, USA), and 3, 3’, 5, 5’-tetramethylbenzidine (TMB) solution
(KPL, USA) were added. In this assay, diluting the reagents,
blocking, washing the reaction mixtures, and removing nonspecific
binding agents from each step were done by using the
solutions and buffers supplied by KPL, USA, which the procedures
were as described by the manufacturer. To estimate the amount
of VP1 in the samples, the standard curve of VP1 protein was
established by replacing the sample with various concentrations
of VP1 (EV71) protein (Immune Technology Corp., USA) between
2.5 and 500 ng/ml.
Residual Vero cell protein determination
Various dilutions of residual Vero cell proteins in the
inactivated EV-A71 samples as non-diluted, 1:10 or 1:100 as
appropriated in PBS pH 7.4 were determined using the Vero
Host Cell Proteins ELISA kit (Cygnus Technologies Inc., North
Carolina, USA) by the procedure described by the manufacturer.
The amount of Vero cell proteins was estimated from the
standard curve generated by 0 - 200.0 ng/ml standard Vero cell
proteins (Cygnus Technologies Inc., North Carolina, and USA). To
determine residual Vero cell proteins in the samples either after
10% - 50% sucrose density gradient ultracentrifugation, or after
the optional washing step.
Residual Vero cell DNA determination
To determine residual Vero cell DNA in the inactivated EVA71
samples either after 10% - 50% sucrose density gradient
ultracentrifugation, or after the optional washing step, the
DNA sample was purified by using QIAamp DNA Mini (Qiagen,
Germany) as described by the manufacturer. Residual Vero cell
DNA was then detected by real-time PCR using resDNASEQ®
Vero Residual DNA Quantization System (Life Technologies, USA).
The method performed was described by the manufacturer, and
the control Vero cell DNA, primers and all other reagents as the
assay mix were supplied in the kit.
Residual bovine serum albumin determination
To determine residual bovine serum albumin (BSA) in the
inactivated EV-A71 samples was by using BSA ELISA kit (Cygnus
Technologies Inc., North Carolina, USA) according to the kit
instructions. BSA concentration was estimated from the standard
curve generated by the standard BSA 0, 0.5, 2.0, 8.0, 32.0 ng/ml
provided by the kit.
SDS-PAGE and Western Blot Analyses
SDS-PAGE and Western blot analyses of the EV-A71 antigens
from Vero cell cultures were performed according to the
protocols reported previously by Liu CC, et al. [12], and molecular
weight markers (PageRuler Prestained Protein Ladder, Thermo
Scientific) were also run simultaneously. For immunoblotting,
the proteins were directly electro-transferred onto the PVDF
membrane. Each membrane was incubated with PBS pH 7.4
containing diluted (1∶1000) either EV-A71-specific monoclonal
antibodies against VP1 or VP2 antigen. Antibodies were bound
for 2 hr at room temperature. Binding of the respective antibodies
to the viral proteins was detected by adding 2.0 ml phosphate
buffer saline (PBS) containing a horseradish peroxidase (HRP)-
conjugated anti-mouse secondary antibody (Thermo Fischer
Scientific) at a dilution of 1:10,000. After 1-hr incubation at
room temperature, the membrane was washed six times with the
assay buffer and blotted dry. The protein bands were revealed by
adding TMB substrate solution (KPL).
Production of EV-A71
When the EV-A71 THA-08-29961 strain was cultured in Vero
cell monolayers either those attached on the inner surface of 850
cm2 roller bottles, or on the outer surface of the micro carrier
beads in small scale bioreactor system, Vero cells and the virus
could be produced extensively, obviously, very larger amount of
the cells and the virus were revealed by the bioreactor system
than by the roller bottles due to the culture volumes and the
amount of starter cells. By SDS PAGE which all proteins could be
stained, both lanes 2 and 3 in Figure 1 loaded with inactivated
EV-A71 THA-08—29961 produced from Vero cell culture, had
many protein bands of different sizes observed (figure not
shown) which meant that the purification methods used could
not remove all other proteins and leave only the viral antigens
needed. However, to determine the antigens of EV-A71 particles,
Western blot analysis was performed further. When the purified
proteins from EV-A71 cultures were stained either with VP1-
specific or VP2-specific monoclonal antibodies, protein bands
were seen positive and the sizes of VP1 was estimated around
36 kDa as shown in Figure 1 A, while there were two bands
against VP2-specific monoclonal antibody of VP0 and VP2 found
at around 38 kDa and 28 kDa, respectively, as shown in Figure 1 B.
Moreover, in B some aggregated proteins of VP2 or VP0 were also
found larger than 60 kDa or more which might be the particle of
VP4 + VP2 +VP3 [12]. Figure 1.
Figure 1: Western-blot analyses with EV-A71 VP1-specific monoclonal antibody (A), which positive bands in lanes 2 and 3 were VP1 estimated the size as 36 kDa. With VP2-specific monoclonal antibody (B), positive bands were of VP0 and VP2 in lanes 2 and 3, respectively. In both photographs,M was molecular weight markers, 2 and 3 were sample proteins from EV-A71 from the Vero cell culture, while 1 in (A) was standard VP1 protein.
Study of condition for inactivation of EV-A71
As shown in Table 1, from equal initial EV-A71 titer of 1.8 x 107
pfu/ml started, at 37oC either with 0.01% or 0.02% formaldehyde
treated for 24 hr, whole of the virus was inactivated completely
as zero titer was shown, while without formaldehyde at this
temperature, after 72 hr the virus titer was still left to 1.5 x 106
pfu/ml, although the titers were gradually decreased as the time
passed. In contrary, at 4oC, when 2.9 x 107 pfu/ml initial titer
was treated with 0.01% or 0.02% formaldehyde, up until 240
hr (Day 10) the virus still existed as 1.0 x 105 and 8.8 x 103 pfu/
ml, respectively, while without formaldehyde at 4oC, by longer
incubation time for 240 hr, high virus amount (1.5 x 107 pfu/ml)
were still left.
Table 1:EV-A71 titers after inactivation with 0.01% and 0.02% formaldehyde at 37oC versus 4oC by various incubation periods.
Incubation period (hr) |
EV-A71 titer (pfu/ml)
at certain % formaldehyde |
At 37oC |
At 4oC |
0% |
0.01% |
0.02% |
0% |
0.01% |
0.02% |
0 |
1.8 x 107 |
1.8 x 107 |
1.8 x 107 |
2.9 x 107 |
2.9 x 107 |
2.9 x 107 |
24 |
1.5 x 107 |
0 |
0 |
N/A |
N/A |
N/A |
48 |
2.3 x 106 |
0 |
0 |
2.8 x 107 |
1.1 x 107 |
2.0 x 106 |
72 |
1.5 x 106 |
0 |
0 |
N/A |
N/A |
N/A |
96 (Day 4) |
N/A |
N/A |
N/A |
1.8 x 107 |
1.2 x 106 |
2.9 x 105 |
168 (Day 7) |
N/A |
N/A |
N/A |
1.6 x 107 |
6.0 x 105 |
5.2 x 104 |
240
(Day 10) |
N/A |
N/A |
N/A |
1.5 x 107 |
1.0 x 105 |
8.8 x 103 |
Purification of inactivated EV-A71
Before monitoring the efficiency of purification process of
inactivated EV-A71 developed in this study, it was proofed that
the yield of EV-A71 among the very first steps of the culture
harvest before taken to virus inactivation was quite consistent.
As shown in Table 2, EV-A71 of different culture batches after
0.65 μ ultra filtration yielded 97.4% mean virus amount to
those of the harvests, thus the initial virus amount taken to be
purified was approximately unchanged before inactivation.
Therefore, monitoring of purity of the inactivated virus product
was assumed to start at the step of virus inactivation afterwards.
Since parameters to monitor impurity of the inactivated EV-A71
in this study were total proteins, Vero cell proteins and DNA, and
BSA, the amount of each parameter was quantified as following
results. As seen in Table 3 as from several culture samples were
shown, after virus inactivation and then consecutive purification
methods performed, initially, by 100 kDa tangential flow filtration
(TFF) residual total proteins were 34.0% - 50.3% (44.6% mean)
comparable to those of the inactivation step, while by further 10%
- 50% sucrose density gradient ultracentrifugation, it removed
more total proteins to 0.3% - 1.2% (0.9% mean), and if washing
step by centrifugation with 30% sucrose was done, remaining
total proteins were 0.1% - 0.6% (0.3% mean).
Table 2:Comparison of EV-A71 in the culture supernatant before and after filtration with 0.65 μ ultra filtration (% was remaining of EV-A71 comparable to that before the ultra filtration).
Culture of EV-A71-infected Vero cells |
EV-A71 in culture supernatant (pfu) |
Before 0.65 µ ultra filtration |
After 0.65 µ ultra filtration |
Sample 1 |
5.34 x 109 |
5.46 x 109 (102.2%) |
Sample 2 |
7.12 x 109 |
7.30 x 109 (102.5%) |
Sample 3 |
3.52 x 1010 |
3.40 x 1010 (96.5%) |
Sample 4 |
1.36 x 1010 |
1.20 x 1010 (88.2%) |
Mean % remaining EV-A71 |
97.4% |
Table 3:Amounts of residual total proteins after purification of the inactivated EV-A71 produced from Vero cell cultures at each step.
Purification step |
Residual total proteins (µg)
(% comparable to the amount of total proteins after virus inactivation) |
Mean %
residual total proteins |
Sample 1 |
Sample 2 |
Sample 3 |
Sample 4 |
Sample 5 |
Virus inactivation |
6,226.50 |
3,340.20 |
1,336.10 |
252,947.70 |
37,780.60 |
- |
100 kDa tangential flow filtration |
2,116.7 (34.0%) |
1,571.7 (47.1%) |
620.3 (46.4%) |
127,238.2 (50.3%) |
17,086.3 (45.2%) |
44.6% |
10-50% sucrose density gradient ultracentrifugation |
17.2 (0.3%) |
33.7
(1.0%) |
9.6
(0.70%) |
2,877.0 (1.1%) |
449.8
(1.2%) |
0.9% |
Washing by 30% sucrose ultracentrifugation |
10.6 (0.2%) |
19.0
(0.6%) |
4.1
(0.3%) |
180.8
(0.1%) |
65.3
(0.2%) |
0.3% |
For removal of Vero cell proteins, from five inactivated EVA71
samples taken, by 100 kDa TFF, Vero cell proteins were
eliminated from the inactivated virus as 33.1% - 88.6% (53.0%
mean), while consecutive 10% - 50% sucrose density gradient
ultracentrifugation removed much greater amounts of Vero
cell proteins as only 0.02% - 1.5% (0.58% mean) were left, and
further washing by 30% sucrose removed the host proteins more
as 0.01% - 0.09% (0.03% mean) were left as shown in Table 4.
To remove BSA, as shown in Table 5, by 100 kDa TFF BSA
was removed as 43.4% - 81.4% (58.8% mean) left, after 10% -
50% sucrose density gradient ultracentrifugation, from two runs
performed, residual BSA was left as 0.02% - 0.05% (0.04% mean),
but if washing with 30% sucrose centrifugation was further done,
no BSA was found or only 0.01% maximum left.
All Vero cell DNAs were also aimed to remove. By the
purification methods described, as comparable to the amounts
of Vero cell DNA at the step of virus inactivation, at the end of
purification either by 10% - 50% sucrose density gradient
ultracentrifugation or further washing by ultracentrifugation
with 30% sucrose, residual Vero cell DNA was left only 0.06% and
0.008%, respectively, as shown in Table 6.
Table 4:Amounts of residual Vero cell proteins after purification of the inactivated EV-A71 produced from Vero cell cultures at each step
Purification step |
Residual Vero cell proteins (µg)
(% comparable to the amount of Vero cell proteins
after virus inactivation) |
Mean % residual Vero cell proteins |
Sample 1 |
Sample 2 |
Sample 3 |
Sample 4 |
Sample 5 |
Virus inactivation |
1,124.20 |
6,454.70 |
6,201.60 |
15,922.00 |
72,152.50 |
- |
100 kDa tangential flow filtration |
371.8 (33.1%) |
5,552.5 (86.0%) |
2,070.0 (33.4%) |
8,069.8 (50.7%) |
44,506.7 (61.7%) |
53.00% |
10-50% sucrose density gradient ultracentrifugation |
0.27 (0.02%) |
N/A |
N/A |
239.4 (1.50%) |
159.2 (0.22%) |
0.58% |
Washing by 30% sucrose ultracentrifugation |
0.11 (0.01%) |
4.9 (0.08%) |
5.5 (0.09%) |
N/A |
N/A |
0.03% |
N/A: Not available
Table 5:Amounts of residual bovine serum albumin (BSA) after purification of the inactivated EV-A71 produced from Vero cell cultures at each step
Purification step |
Residual BSA (µg)
(% comparable to the amount of BSA
after virus inactivation) |
Mean % residual BSA |
Sample 1 |
Sample 2 |
Sample 3 |
Sample 4 |
Virus inactivation |
497.50 |
302.90 |
4,293.40 |
70,551.30 |
- |
100 kDa tangential flow filtration |
216.1 (43.4%) |
158.0 (52.2%) |
2,498.4 (58.2%) |
57,432.5 (81.4%) |
58.80% |
10%- 50% sucrose density gradient ultracentrifugation |
0.087 (0.02%) |
N/A |
N/A |
33.1 (0.05%) |
0.04% |
Washing by 30% sucrose ultracentrifugation |
0.005 (0.00) |
0.03 (0.01%) |
0.36 (0.01%) |
N/A |
0.01% |
Table 6:Amounts of residual Vero cell DNA after purification of inactivated EV-A71 produced from Vero cell cultures at certain steps
Purification step |
Residual Vero cell DNAs (ng)
(% comparable to the amount of Vero cell DNAs after virus inactivation) |
Sample 1 |
Sample 2 |
Virus inactivation |
88.39 x 103 |
1,510.9 x 103 |
10% - 50% sucrose density gradient ultracentrifugation |
N/A |
935.00
(0.06%) |
Washing by 30% sucrose ultracentrifugation |
7.4
(0.008%) |
N/A |
EV-A71 VP1 antigen recovery
In this study, to search for which fraction that most of the
target virus accumulated during 10% - 50% sucrose gradient
ultracentrifugation, we set the same experiment with live EV-A71
viruses to determine the virus titers to lead to fractions of virus
accumulation. Equal fifty fractions were collected after the run
and determined total proteins versus the virus titers. As shown in
Figure 2, the curve of total proteins was higher as higher fractions
obtained which the highest concentrations were steady between
fractions 24 – 29, after that it declined until fraction 47, then total
protein concentrations were increased much again at fractions 49
– 50, while the EV-A71 virus titers were depleted from the first
fractions but accumulated only in the two last fractions of 49 and
50. This experiment guided that the accumulation of inactivated
EV-A71 might also be at the fractions 49 – 50, therefore, these
two fractions were determined for the recovery of inactivated
EV-A71 which was monitored by measuring the amount of the
VP1 antigen of EV-A71 by quantitative ELISA as described. By
the purification methods used, from four different experiments,
at the end, quite small amount of VP1 was left as % recovery
was ranged 0.85% - 3.2% (2.1% mean) after 10% - 50% sucrose
density ultracentrifugation comparable to those found at the step
of virus inactivation as shown in Table 7, while after washing with
30% sucrose, a bit less % recovery was found (data not shown).
Figure 2.
Table 7:Amounts of the VP1 antigen of EV-A71 after virus inactivation and purification by 10% - 50% sucrose density gradient ultracentrifugation.
Step of purification |
Amount of VP1 antigen (ng)
(% recovery comparable to the amount of VP1 after virus inactivation) |
Mean % recovery of VP1 |
Sample 1 |
Sample 2 |
Sample 3 |
Sample 4 |
Virus inactivation |
315.4 x 103 |
235.4 x 103 |
2,753 x 103 |
2,247 x 103 |
- |
10% - 50% sucrose density gradient ultracentrifugation |
5900
(1.9%) |
2,036 (0.8%) |
86,940 (3.2%) |
54,370 (2.4%) |
2.10% |
Figure 2: Concentration of total proteins ( ) versus EV-A71 titer ( ) in each fraction collected from 10% - 50% sucrose density gradient
ultracentrifugation
Evaluation of purity of the purified inactivated EV-A71
As reported by Promkhatkaew D, et al [9], we have
investigated immunogenicity in BALB/c mice of the inactivated
EV-A71 purified accordingly to the procedures used in this study,
by varying the immunogen as 1.0 or 2.5 μg total proteins which
high neutralizing antibodies against the homologous EV-A71
virus have been shown, therefore, safety and immunogenicity in
other animal models and in human were expected to study further
if it is applicable. Consequently, examples of purified inactivated
EV-A71 total proteins performed accordingly as described were
elucidated for design of a human vaccine dose and evaluation of
vaccine candidate purity. In the Table 8, if 1.0 μg total proteins
per 0.5 ml volume was designed to be a human dose, thus total
numbers of human doses were estimated accordingly to total
proteins obtained ranging 180 – 900 doses per purification run
and culture volume. After purification, due to the yields of VP1
left in each sample, one dose might contain 233 -599 ng VP1
antigen. To evaluate purity, residual BSA, Vero cell DNA, and Vero
cell proteins were 0.41 – 5.7 ng, 0.04 – 1.03 ng, and 0.054 – 0.126
μg/ml per human dose, respectively.
Table 8:Examples of purified inactivated EV-A71 total proteins performed accordingly as described in this study, were elucidated for design of a human vaccine dose. Number of human doses, the volume and amount of total proteins per dose, were predicted to evaluate the amount of VP1 antigen, residual BSA, Vero cell proteins and Vero cell DNA per human dose
Purified inactivated EV-A71 |
Sample 1 |
Sample 2 |
Sample 3 |
Amount of total proteins |
433.7 µg |
912.6 µg |
180.9 µg |
No. of human dose predicted |
430 dose |
900 dose |
180 dose |
Amount of total proteins/0.5 ml/dose |
1.0 µg |
1.0 µg |
1.0 µg |
Amount of VP1 antigen per respective total proteins |
257.7 x 103 ng |
209.7 x 103 ng |
45.3 x 103 ng |
Amount of VP1/dose |
599 ng/ dose |
233 ng/ dose |
302 ng/ dose |
Residual BSA |
2,460ng
(5.7 ng/dose) |
370ng
(0.41 ng/dose) |
360ng
(2.0 ng/dose) |
Residual Vero cell proteins |
27.2µg
(0.126 µg/ml) |
35.73µg
(0.08 µg/ml) |
4.86µg
(0.054 µg/ml) |
Residual Vero cell DNA |
N/A |
935.0ng
(1.03ng/ dose) |
7.4ng
(0.04 ng/ dose) |
In this study, EV-A71 could be propagated extensively in Vero
cell cultures both by roller bottles and small scale bioreactor
system. Types of cultivation were dependent on amount of
the virus needed to handle for purification, and in order to
study preliminarily a bioreactor scale upstream process. The
viruses obtained by both cultivation types exhibited similar
characteristics as determined by plaque assay, and with specific
anti-EV-A71 VP1 monoclonal antibody by quantitative ELISA and
anti-EV-A71 VP1 or VP2 monoclonal antibody by Western blot.
Since no infectivity was detected in the EV-A71 samples taken
for 24 hr after exposure to 0.01% formaldehyde at 37oC, this
condition was selected to do virus inactivation throughout the
study, whereas, by the temperature of 4oC for 240 hr (10 days)
the virus was still detected, even after 30 days (data not shown).
Additionally, there has also been some evidence reported that low
temperature of 4oC bore a high risk of incomplete inactivation,
while higher temperatures were more efficient [13], moreover
some has reported the inactivation of EV-A71 at 37oC but with
longer time for 3 days [12]. Although at 37oC, we did not vary
the incubation time less than 24 hr, but this time interval seemed
to be convenient to do and it certainly gave complete EV-A71
inactivation. The present formaldehyde inactivation condition
did not modify the EV-A71 antigens since the VP1 antigen could
be detected by quantitative ELISA, and VP1 and VP2 antigens by
Western-blot as shown in this study, and moreover, our inactivated
virus processed similarly could induce neutralizing antibodies in
mice against EV-A71 virus as reported elsewhere [9].
The EV-A71 taken to use for study of purification either from
roller bottles or bioreactor system was in the harvests of culture
media since these were easier to obtain and the amounts of the
virus released from Vero cells were quite high enough. After
removing all cell debris by filtration with 0.65 μ membrane which
was the step prior to virus inactivation where the virus mean
titer was as high as 97.4% comparable to those of the culture
supernatant, thus the step of virus inactivation was subjected
to an initial step for monitoring degrees of purification. In this
study TFF with 100 kDa membrane was selected to primarily
remove molecules like most of proteins, nucleic acids, lipids and
other cellular materials having the size smaller than 100kDa in
the permeate, and expected to retain the inactivated virus in the
retentive of the runs. We found that this method was effective
as abundant total proteins were removed as the mean residual
total proteins was 44.6%, and much more total proteins could
be removed by further methods of 10% - 50% sucrose gradient
ultracentrifugation and washing with 30% sucrose, as 0.9%
and 0.3% total proteins left, respectively. Moreover, from the
experiments, the process also removed significant amounts of
BSA, and the proteins and DNA of Vero host cell.
Since in some other studies, 1.0 μg and 0.25 μg total proteins,
as relatively as 640 U and 160 U, respectively, of Vigoo inactivated
EV71 vaccine have been used as doses for immunization in adults
and children to study tolerability and immunogenicity in China,
that no serious adverse event was observed after two doses,
and gave overall efficacy as 94.8% during 2-year follow up, we
might hypothesize the same amount of 1.0 μg total proteins
for a human dose in order to evaluate the purity of our vaccine
candidate [14,15] . As in Table 8, if our human dose was of 1.0
μg total proteins, thus it would certainly not be greater than 10
μg per human dose as specified by some WHO Technical Report
Series [16]. For residual BSA which should not be greater than 50
ng per human dose [17], our purified inactivated virus met the
requirement since the maximum amount was only 5.7 ng/dose
estimated. Moreover, the left of Vero cell DNA of which the higher
was 1.03 ng/dose shown was within the requirement of WHO as
shall be less than 10 ng per human dose [17]. Similarly, residual
Vero cell proteins which were maximally found 0.126 μg/ml
was less than 0.32 μg/ml found in the inactivated EV71 vaccine
of Liang Z, et al that have claimed to met the specifications of
Pharmacopoeia of the People’s Republic of China, 2005, and WHO
Recommendations for the Preparation, Characterization and
Establishment of International and other Biological Reference
Standards (Revised 2nd edn) [18].
For the VP1 amounts shown in Table 7, those data of VP1
could not be brought to summarize in Table 8 since the amounts
of respective total proteins of such samples were not available to
interpret VP1/dose, however, in Table 7, % recovery comparable
to initial VP1 amounts of inactivation step were revealed. Actually,
although we only determined the quantity of VP1, other EV-A71
structural capsid proteins like VP2, VP3 and VP4 might also exist
in the product, where not only in VP1 but various neutralization
epitopes have been reported in VP2 and VP4 [19]. By 10% - 50%
sucrose gradient ultracentrifugation performed in our study, most
of total proteins were accumulated at around 25% - 30% sucrose,
while most of live EV-A71 were shown sedimented at around
45% -50% sucrose as shown in Figure 2, however, since we did
not monitor EV-A71 antigens throughout all fractions collected,
we could not proof whether there were some viral antigens which
had smaller molecular sizes deposited along different densities
or not.
However, the inactivated EV-A71 processed as described
has already been studied immunogenicity in mice, of which two
and three injections of this candidate with and without alum
have shown desirable effective neutralizing antibodies [9]. In
conclusion, this study presented primarily downstream process
in smaller scale with satisfaction of purity of the inactivated virus,
however, it seemed revealing very low recovery of the antigen
detected, this might need more studies to reveal easier or less
method for purification but should still reveal similar or higher
product yield with standard purity. Since we used the techniques
to separate bimolecular based on sizes, therefore if the product
was still an intact particle which might be composed of sixty
copies of VP1+VP2+VP3+VP4 capsid proteins, the size of the
antigens might be larger that could not pass the TFF membrane,
but if the particle was disaggregated presenting smaller size
capsid molecules ranges 8 – 59 kDa [12], those molecules might
pass through the membrane used, and be accumulated at other
sucrose densities unexpected to collect by the 10% - 50% sucrose
gradient used. Consequently, we predicted to use 1.0 μg total
proteins to be a human dose, thus this might contain 233 – 599
ng VP1 antigen/dose which was quite in high amount. Whether
this dose would appropriate to induce protective neutralizing
immune response or even safety to adults and children would
have to be investigated in animals prior to human further.
We were grateful to Mr. Ratigorn Guntapong and Ms. Ratana
Tacharoenmuang, National Institute of Health, Department of
Medical Sciences, Ministry of Public Health for kindly provision
us the enterovirus A71 strain THA-08-29961 used in this study.
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