2Molecular biology and genetics Department, Faculty of medicine, Isfahan University of medical sciences, Isfahan, Iran
3Neurology Department, Faculty of medicine, Isfahan University of medical sciences, Isfahan, Iran
4Immunology Department, Faculty of medicine, Tarbiat Modares University, Tehran, Iran
5Faculty of medicine, Isfahan University of medical sciences, Isfahan, Iran
6Isfahan multiple sclerosis Research Center, Isfahan, Iran
Methods: In this case-control study, DNA from peripheral blood of 200 Relapsing Remitting Multiple Sclerosis (RRMS) patient of Isfahan Multiple Sclerosis Society (IMSS) is extracted and then allele frequencies and genotyping were performed using HRM-PCR method.
Results: Our results showed that there is no significant difference between RRMS patients and controls with respect to the distribution of IL7Ra gene polymorphism (P = 0.57, OR = 1.16). Further analysis after adjusting for age and sex has displayed similar results.
Conclusion: We could not find association between CD127 gene polymorphism and risk of MS; however, more studies with larger sample sizes in different ethnical populations are needed to demonstrate role of this SNP in pathogenesis of MS.
Keywords: Multiple sclerosis; CD127; rs6897932; IL7Ra
The (C) allele of rs6897932 synthesis the amino acid threonine greater than isoleucine at position 244that associated with an increased risk of multiple sclerosis. The C allele is the most common in all recognized population and influences the ratios membrane and soluble isoforms of the gene and T allele is protective. Under the influence reaction Interleukin-7 receptor alpha with IL-7 a, formed signaling complex, that is important to maintain memory T cells , development ,proliferation and survival of B and T lymphocytes, especially CD4+positive T that seen in lesions of MS patients.
AlthoughIL-7Rα or CD-127 SNP has been investigated in previous studies, their result were controversial [6,7] and it has also been shown that frequencies of SNP polymorphisms in genetically autoimmune diseases such as MS vary in different ethnic populations in some studies [8]. So in this study we aimed to investigate association between different genotypes of rs6897932 SNP with risk of MS in Iranian population residing in the province of Isfahan, Iran.
Peripheral blood samples were collected from RRMS patients and healthy controls in tubes containing EDTA (Ethylene diamine tetra acetic acid ) as anticoagulant and then DNA was extracted by QIAamp DNA Blood Midi Kit' (Quiagen, Hilden, Germany) according to the manufacturer's instructions. To determine quality of extracted DNA, agarose gel electrophoresis was used by UV absorption at 260 and 280 nm. The CD127 SNP results in the replacement of C to T in the coding region of exon 6. Real-time PCR was performed using forward primer (5'-CTTCAAGTGGCAGATGCTCTG) and reverse primer (3'-CCCACACAATCACCCTCTTTAT) to amplify the DNA region containing the CD127 SNP. Real-time-PCR was implemented under the following condition: 95°C for 5 minutes followed by 40 cycles of 95°C for 10 seconds, 55°C for 20 seconds, and 72°C for 10 seconds. High resolution melting curve (HRM) analysis was used for SNP genotyping, so we raised temperature gradually from 65 °C to 95 °C within 2 minutes.
Data were analyzed using the SPSS program (version 20; SPSS Inc., Chicago, USA).Chi square test was employed for Hardy– Weinberg equilibrium and comparison of genotype and allele frequencies. Furthermore, odds ratio and P-value were calculated using logistic regression. Results have been reported as a mean (±SD) and number (percent). All tests were two-tailed, and a P-value of <0.05 was considered.
Frequency of C/T and T/T genotypes of rs6897932 SNP were 26% and 74% in RRMS patients and 39% and 71% in controls, respectively and also it has been shown that frequency of alleles in patients and controls were close to each other. In addition, statistical analysis using Fisher test could not find significant association between patients and controls with respect to the distribution of genotypes (0.576) and alleles (0.772), suggesting no association between CD127 gene polymorphism and susceptibility to MS. Allele and genotype distribution of rs6897932 SNP in cases and controls are shown in Table 2.
Further analysis revealed that EDSS (P = 0.476) has no significant association with type of genotypes in the treated patients. On the other hand, the duration of remission after treatment is no differences in genotype distribution between the two patient subgroups (P = 0.385) as well as it was revealed that treatment for more than one year, CT genotypesis less prevalentthan CC (Table 3).
Variables |
Case(n = 200) |
Control (n = 200) |
P-Value |
|
Age; year |
31.22 ± 8.49 |
32.35 ± 7.50 |
0.159 |
|
Gender |
Male |
40(20%) |
37(18.55) |
0.800 |
Female |
160(80%) |
163(81.5%) |
||
Education |
Preliminary |
50(26.6%) |
51(25.8%) |
0.363 |
Secondary |
75(39.9%) |
92(46.5%) |
||
University |
63(33.5%) |
55(27.8%) |
||
Family status |
Single |
12(30.8%) |
49(24.6%) |
0.427 |
Married |
27(69.2%) |
150(75.4%) |
||
EDSS |
≤1 |
95(87.2%) |
- |
- |
(1-2) |
9(8.3%) |
- |
||
>2 |
5(4.6%) |
- |
||
Treatment |
Treated |
115(57.5%) |
- |
- |
Untreated |
85(42.5%) |
- |
||
Duration of remission after treatment |
≤1 |
51(44.3%) |
- |
- |
>1 |
64(55.7%) |
- |
||
Allele and genotype |
Case(n=200) |
Control(n = 200) |
OR(95% CI) |
P-Value |
|
Polymorphism frequency |
CC |
148(74%) |
142(71%) |
1.16(0.74-1.80) |
0.576 |
CT |
52(26%) |
58(29%) |
|||
Allele frequency |
C |
174(87%) |
171(85.5%) |
1.13(0.64-2.01) |
0.772 |
T |
26(13%) |
29(14.5%) |
|||
Variables |
Genotype |
OR (95% CI) |
P-Value |
||
CC |
CT |
||||
EDSS |
≤1 |
73(85.9%) |
22(91.7%) |
0.583(0.36-0.94) |
0.476 |
(1-2) |
7(8.2%) |
2(8.2%) |
|||
>2 |
5(5.9%) |
0(0%) |
|||
Duration of remission after Treatment |
≤1 |
29(34.53%) |
14(45.17%) |
0.640(0.277-1.480) |
0.385 |
>1 |
55(65.47%) |
17(54.83%) |
|||
Patients |
Treated |
84(73%) |
31(27%) |
1.12(0.59-2.13) |
0.747 |
Untreated |
64(75.29%) |
21(24.71%) |
|||
In a similar study, Iabayyan, et al. [7] investigated association between susceptibility to MS and two SNPs related to IL-7Rα gene including rs6897932 and rs11567685 SNP in 200 MS patients and 200 healthy controls and they found that in Jordanian population there is no difference between controls and patients in terms of frequencies of rs6897932SNP (P = 0.583). On the other hand, analysis of rs11567685 which is located in the promoter region and affects gene expression showed that genetic profile was significantly different between MS patients and general population (P = 0.02). These data suggest that IL-7Rα plays a biological role in MS via implicating in its expression, but not modification.
Our results are also in line with finding of Heidari, et al. [12] who earlier reported that susceptibility to MS in Iranian population is not associated with rs6897932 SNP, however, they found a significant difference between secondary progressive MS patients and controls. These failures to demonstrate association between risk of MS and CD127 gene polymorphisms might be due to low sample size of these studies, similar to our study in which we studied 200 RRMS patients. But it should be considered although low sample size can affect results of these studies, large sample sizes might be yielded similar results, as Traboulsee, et al. [13] studied IL7Ra gene polymorphism among 1,978 Canadian MS patients and they also failed to find association between this SNP and susceptibility to MS (p value = 0.07), however, they found significant association between IL7R and patients who developed Progressive MS (PRMS) (p = 0.002; odds ratio = 0.73).
Given complex etiology of MS and the role of both environmental and genetic factors and since genotype frequencies of SNP varies widely among different populations, we should consider role of different races in these controversial findings.
On the other hand, there are other studies which reported significant association between MS and rs6897932 gene polymorphism and in contrast to studies which could notbe found this association; their samples covered more diverse ethnic groups. Furthermore, investigation among them showed that except one study [14], almost all of them suggested that C allele is associated with high risk of MS [7]. IL7Ra rs6897932 SNP is located in exon 6 which encodes integral membrane domain of the receptor, while rs6897932 SNP causes skipping at this site which leads to more soluble form of protein. In addition, it has been shown that being carrier of C allele is associated with reduced production of membrane-bound form of IL7Ra protein. This increased level of soluble form of IL7Ra causes an increase in response of T cells to myelin basic protein which may leads to development of MS [15].
In summary, we could not find association between CD127 gene polymorphism with risk of MS, however, more studies with larger sample sizes in different ethnical populations are needed to demonstrate role of this SNP in pathogenesis of MS.
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